Jens Lagergren <jensl@csc.kth.se> Telephone: +46 8 52 48 14 96 Address: Science for Life Laboratory, Box 1031, 17121 Solna, Sweden Visiting address: Science for Life Laboratory, KISP (Karolinska Institutet Science Park), Tomtebodavägen 23A, 17165 Solna, Sweden (map with SciLifeLab Stockholm indicated) (Denna sida finns ej tillgänglig på svenska.)

Affiliation

I am a professor in computer science and computational biology at CB (the Computational Biology department), CSC, KTH Royal Institute of Technology. I am located at SciLifeLab Stockholm, a joint venture between the universities in Stockholm.

Recent publications

Publications since 2002

PhD positions

• There are currently no open PhD positions, but it will this fall be possible to chose PhD projects focused on computational analysis of sequencing data, in the context of RNA biology of neural cells, with me as advisor under the EuroSPIN - Erasmus Mundus Joint Doctoral Programme in Neuroinformatics

Current Courses

• During the fall semester 2012, I will give the course DD2447 Statistical Methods in Applied Computer Science 6.0 credits. The text book will most likely be Kevin Murphy's new book on Machine Learning.
• During fall 2013 or spring 2014, I will probably give a course on Probabilistic Graphical Models.

Ph.D. Students

• Hossein Farahani
• Mattias Frånberg
• Owais Mahmudi
• Auwn Sayyed
• Joel Sjöstrand
• Ikram Ullah
• Frances Vega

Post-docs

• Pekka Parviainen

Former Ph.D. Students

• Lars Arvestad
• Lars Ivansson
• Isaac Elias
• Örjan Svensson
• Ali Tofigh

Former Post-docs

• Ann-Charlotte Berglund
• Öjvind Johansson

Service since 2008

Program committee Recomb 2012

Program committee ISMB 2012

Program committee Recomb 2011

Program committee WABI 2011

Program committee Recomb 2010

Program committee WABI 2010

Program committee Recomb 2009

Program committee, track chair, ISMB 2009

Program committee Recomb 2008

Program committee ISMB 2008

Co-chair program committee WABI 2008

Steering committee Recomb CG